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ASM347182v1

Organism name:
Parabacteroides distasonis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM16-4
BioSample:
SAMN09734835
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003471825.1 (latest)
RefSeq assembly accession:
GCF_003471825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRKE01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1926291 [UID] 7301698 [GenBank] 7669908 [RefSeq]

See Genome Information for Parabacteroides distasonis

There are 1007 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 16:07:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,723
CDS (total)::4,641
Genes (coding)::4,476
CDS (coding)::4,476
Genes (RNA)::82
rRNAs::2, 2 (5S, 16S)
complete rRNAs::1 (5S)
partial rRNAs::1, 2 (5S, 16S)
tRNAs::76
ncRNAs::2
Pseudo Genes (total)::165
Pseudo Genes (ambiguous residues)::8 of 165
Pseudo Genes (frameshifted)::75 of 165
Pseudo Genes (incomplete)::73 of 165
Pseudo Genes (internal stop)::36 of 165
Pseudo Genes (multiple problems)::24 of 165
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,403,393
Total ungapped length5,402,567
Gaps between scaffolds0
Number of scaffolds74
Scaffold N50218,495
Scaffold L508
Number of contigs122
Contig N50146,155
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)74

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,403,393745,402,567218,495480

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides distasonisParabacteroides distasonis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000012845.1Parabacteroides distasonis ATCC 8503suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000012845.1Parabacteroides distasonissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9277.5987.13
Best-match type98.9277.5987.13

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna