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ASM347196v1

Organism name:
Butyricimonas virosa (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM16-14
BioSample:
SAMN09734821
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003471965.1 (latest)
RefSeq assembly accession:
GCF_003471965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRKM01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1926371 [UID] 7301868 [GenBank] 7357098 [RefSeq]

See Genome Information for Butyricimonas virosa

There are 59 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 16:13:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,091
CDS (total)::4,030
Genes (coding)::3,953
CDS (coding)::3,953
Genes (RNA)::61
rRNAs::3, 1, 2 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 1 (5S, 23S)
tRNAs::52
ncRNAs::3
Pseudo Genes (total)::77
Pseudo Genes (ambiguous residues)::6 of 77
Pseudo Genes (frameshifted)::38 of 77
Pseudo Genes (incomplete)::33 of 77
Pseudo Genes (internal stop)::19 of 77
Pseudo Genes (multiple problems)::18 of 77
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,864,016
Total ungapped length4,863,657
Gaps between scaffolds0
Number of scaffolds95
Scaffold N50108,175
Scaffold L5015
Number of contigs113
Contig N50106,814
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)95

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,864,016954,863,657108,175180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Butyricimonas virosaButyricimonas virosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000519105.1Butyricimonas virosa DSM 23226type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000519105.1Butyricimonas virosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7681.1483.68
Best-match type98.7681.1483.68

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna