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ASM347202v1

Organism name:
Bacteroides fragilis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM15-16
BioSample:
SAMN09734817
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003472025.1 (latest)
RefSeq assembly accession:
GCF_003472025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRKP01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1926391 [UID] 7301898 [GenBank] 7670148 [RefSeq]

See Genome Information for Bacteroides fragilis

There are 1151 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 16:13:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,757
CDS (total)::4,691
Genes (coding)::4,513
CDS (coding)::4,513
Genes (RNA)::66
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::60
ncRNAs::3
Pseudo Genes (total)::178
Pseudo Genes (ambiguous residues)::1 of 178
Pseudo Genes (frameshifted)::115 of 178
Pseudo Genes (incomplete)::47 of 178
Pseudo Genes (internal stop)::49 of 178
Pseudo Genes (multiple problems)::32 of 178
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,292,183
Total ungapped length5,292,083
Gaps between scaffolds0
Number of scaffolds40
Scaffold N50377,111
Scaffold L505
Number of contigs50
Contig N50309,911
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)40

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,292,183405,292,083377,111100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides fragilisBacteroides fragilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000025985.1Bacteroides fragilis NCTC 9343type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000025985.1Bacteroides fragilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1386.2087.03
Best-match type99.1386.2087.03

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna