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Source database (GenBank or RefSeq) File type

ASM347256v1

Organism name:: Bacteroides sp. AM10-21B (CFB group bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: AM10-21B
BioSample:: SAMN09734768
BioProject:: PRJNA482748
Submitter:: BGI
Date:: 2018/09/06
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_003472565.1 (latest)
RefSeq assembly accession:: GCF_003472565.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QRME01
Assembly method:: SOAPdenovo v. 2
Expected final version:: yes
Genome coverage:: 100x
Sequencing technology:: Illumina Hiseq

IDs: 1926671 [UID] 7302458 [GenBank] 7357358 [RefSeq]

See Genome Information for Bacteroides sp. AM10-21B

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003472565.1	=	GCF_003472565.1	ASM347256v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/03/2018 17:19:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,101
CDS (total)::3,039
Genes (coding)::2,967
CDS (coding)::2,967
Genes (RNA)::62
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::57
ncRNAs::2
Pseudo Genes (total)::72
Pseudo Genes (ambiguous residues)::1 of 72
Pseudo Genes (frameshifted)::32 of 72
Pseudo Genes (incomplete)::37 of 72
Pseudo Genes (internal stop)::23 of 72
Pseudo Genes (multiple problems)::19 of 72
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,747,128
Total ungapped length	3,747,034
Gaps between scaffolds	0
Number of scaffolds	21
Scaffold N50	353,973
Scaffold L50	5
Number of contigs	29
Contig N50	353,973
Contig L50	5
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	21

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	99.20	87.93	80.17

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ASM347256v1

See Genome Information for Bacteroides sp. AM10-21B

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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