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ASM347262v1

Organism name:
[Ruminococcus] lactaris (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM09-9
BioSample:
SAMN09734763
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003472625.1 (latest)
RefSeq assembly accession:
GCF_003472625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRMI01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1926701 [UID] 7302518 [GenBank] 7356358 [RefSeq]

See Genome Information for [Ruminococcus] lactaris

There are 76 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 16:56:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,821
CDS (total)::2,754
Genes (coding)::2,603
CDS (coding)::2,603
Genes (RNA)::67
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::59
ncRNAs::5
Pseudo Genes (total)::151
Pseudo Genes (ambiguous residues)::9 of 151
Pseudo Genes (frameshifted)::38 of 151
Pseudo Genes (incomplete)::112 of 151
Pseudo Genes (internal stop)::24 of 151
Pseudo Genes (multiple problems)::29 of 151
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,846,619
Total ungapped length2,846,239
Gaps between scaffolds0
Number of scaffolds98
Scaffold N5066,011
Scaffold L5014
Number of contigs122
Contig N5064,645
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)98

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,846,619982,846,23966,011240

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
[Ruminococcus] lactaris[Ruminococcus] lactaris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025152405.1[Ruminococcus] lactaris ATCC 29176type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025152405.1[Ruminococcus] lactaristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9880.6483.96
Best-match type98.9880.6483.96

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna