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ASM347266v1

Organism name:
Phocaeicola plebeius (CFB group bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM09-36
BioSample:
SAMN09734757
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003472665.1 (latest)
RefSeq assembly accession:
GCF_003472665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRML01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1926721 [UID] 7302568 [GenBank] 7357718 [RefSeq]

See Genome Information for Phocaeicola plebeius

There are 112 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 17:26:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,414
CDS (total)::3,315
Genes (coding)::3,236
CDS (coding)::3,236
Genes (RNA)::99
rRNAs::2, 1, 2 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (23S)
tRNAs::92
ncRNAs::2
Pseudo Genes (total)::79
Pseudo Genes (ambiguous residues)::3 of 79
Pseudo Genes (frameshifted)::30 of 79
Pseudo Genes (incomplete)::44 of 79
Pseudo Genes (internal stop)::15 of 79
Pseudo Genes (multiple problems)::13 of 79
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,049,089
Total ungapped length4,048,854
Gaps between scaffolds0
Number of scaffolds81
Scaffold N5093,434
Scaffold L5015
Number of contigs98
Contig N5071,516
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)81

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,049,089814,048,85493,434170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Phocaeicola plebeiusPhocaeicola plebeius

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000187895.1Phocaeicola plebeius DSM 17135suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000187895.1Phocaeicola plebeiussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.6371.8465.80
Best-match type94.6371.8465.80

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna