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ASM347324v1

Organism name:
Collinsella sp. AM09-41 (actinobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM09-41
BioSample:
SAMN09734759
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003473245.1 (latest)
RefSeq assembly accession:
GCF_003473245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRMJ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1926991 [UID] 7303108 [GenBank] 7357458 [RefSeq]

See Genome Information for Collinsella sp. AM09-41

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 16:59:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,969
CDS (total)::1,905
Genes (coding)::1,881
CDS (coding)::1,881
Genes (RNA)::64
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::57
ncRNAs::3
Pseudo Genes (total)::24
Pseudo Genes (ambiguous residues)::2 of 24
Pseudo Genes (frameshifted)::7 of 24
Pseudo Genes (incomplete)::16 of 24
Pseudo Genes (internal stop)::4 of 24
Pseudo Genes (multiple problems)::5 of 24
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,256,687
Total ungapped length2,256,548
Gaps between scaffolds0
Number of scaffolds27
Scaffold N50300,702
Scaffold L503
Number of contigs38
Contig N50150,787
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)27

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,256,687272,256,548300,702110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Collinsella sp. AM09-41Collinsella sp. AM09-41

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010509075.1Collinsella aerofacienstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.3177.6871.40

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna