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ASM347341v1

Organism name:
Leyella stercorea (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF42-9
BioSample:
SAMN09734707
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • annotation fails completeness check
  • many frameshifted proteins
GenBank assembly accession:
GCA_003473415.1 (latest)
RefSeq assembly accession:
GCF_003473415.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRNO01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1927081 [UID] 7303288 [GenBank] 7358098 [RefSeq]

See Genome Information for Leyella stercorea

There are 83 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 17:45:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,724
CDS (total)::2,660
Genes (coding)::2,345
CDS (coding)::2,345
Genes (RNA)::64
rRNAs::6, 5, 3 (5S, 16S, 23S)
complete rRNAs::4, 1 (5S, 23S)
partial rRNAs::2, 5, 2 (5S, 16S, 23S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::315
Pseudo Genes (ambiguous residues)::0 of 315
Pseudo Genes (frameshifted)::246 of 315
Pseudo Genes (incomplete)::71 of 315
Pseudo Genes (internal stop)::17 of 315
Pseudo Genes (multiple problems)::18 of 315
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,117,648
Total ungapped length3,117,648
Number of contigs152
Contig N5040,058
Contig L5027
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)152

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,117,6481523,117,64840,05800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leyella stercoreaLeyella stercorea

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000235885.1Leyella stercorea DSM 18206suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000235885.1Leyella stercoreasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.2578.1778.78
Best-match type97.2578.1778.78

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna