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ASM347349v1

  • Anomalous assembly.
Organism name:
Ruminococcus sp. AM23-1LB (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM23-1LB
BioSample:
SAMN09736282
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003473495.1 (latest)
RefSeq assembly accession:
GCF_003473495.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUCI01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1927121 [UID] 7303358 [GenBank] 7357798 [RefSeq]

See Genome Information for Ruminococcus sp. AM23-1LB

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 18:08:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,850
CDS (total)::3,799
Genes (coding)::3,599
CDS (coding)::3,599
Genes (RNA)::51
rRNAs::1 (16S)
partial rRNAs::1 (16S)
tRNAs::46
ncRNAs::4
Pseudo Genes (total)::200
Pseudo Genes (ambiguous residues)::16 of 200
Pseudo Genes (frameshifted)::42 of 200
Pseudo Genes (incomplete)::133 of 200
Pseudo Genes (internal stop)::28 of 200
Pseudo Genes (multiple problems)::19 of 200
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,066,150
Total ungapped length4,065,127
Gaps between scaffolds0
Number of scaffolds70
Scaffold N50154,743
Scaffold L5010
Number of contigs114
Contig N50148,176
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)70

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,066,150704,065,127154,743440

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcus sp. AM23-1LBRuminococcus sp. AM23-1LB

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025148125.1Blautia wexleraesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.0576.7766.61

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%