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ASM347386v1

Organism name:
Clostridium sp. AM16-23 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM16-23
BioSample:
SAMN09734828
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003473865.1 (latest)
RefSeq assembly accession:
GCF_003473865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUCX01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1927301 [UID] 7303718 [GenBank] 7356858 [RefSeq]

See Genome Information for Clostridium sp. AM16-23

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 18:53:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,146
CDS (total)::3,087
Genes (coding)::2,938
CDS (coding)::2,938
Genes (RNA)::59
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::2 (23S)
tRNAs::51
ncRNAs::4
Pseudo Genes (total)::149
Pseudo Genes (ambiguous residues)::2 of 149
Pseudo Genes (frameshifted)::36 of 149
Pseudo Genes (incomplete)::102 of 149
Pseudo Genes (internal stop)::27 of 149
Pseudo Genes (multiple problems)::16 of 149
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,326,062
Total ungapped length3,325,756
Gaps between scaffolds0
Number of scaffolds36
Scaffold N50202,913
Scaffold L506
Number of contigs47
Contig N50153,630
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)36

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,326,062363,325,756202,913110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium sp. AM16-23Clostridium sp. AM16-23

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900104665.1Traorella massiliensissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.961.281.64

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena