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ASM347455v1

Organism name:
Agathobacter rectalis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AF39-14AC
BioSample:
SAMN09734685
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003474555.1 (latest)
RefSeq assembly accession:
GCF_003474555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QROF01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1927651 [UID] 7304418 [GenBank] 7358458 [RefSeq]

See Genome Information for Agathobacter rectalis

There are 427 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 18:22:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,278
CDS (total)::3,219
Genes (coding)::3,021
CDS (coding)::3,021
Genes (RNA)::59
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::52
ncRNAs::4
Pseudo Genes (total)::198
Pseudo Genes (ambiguous residues)::20 of 198
Pseudo Genes (frameshifted)::58 of 198
Pseudo Genes (incomplete)::131 of 198
Pseudo Genes (internal stop)::29 of 198
Pseudo Genes (multiple problems)::37 of 198
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,340,353
Total ungapped length3,339,743
Gaps between scaffolds0
Number of scaffolds73
Scaffold N50197,635
Scaffold L506
Number of contigs123
Contig N50128,284
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)73

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,340,353733,339,743197,635500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Agathobacter rectalisAgathobacter rectalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000020605.1Agathobacter rectalis ATCC 33656suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000020605.1Agathobacter rectalissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.3871.6269.34
Best-match type97.3871.6269.34

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna