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ASM347521v1

Organism name:
Dorea formicigenerans (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AF36-1BH
BioSample:
SAMN09734645
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003475215.1 (latest)
RefSeq assembly accession:
GCF_003475215.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRPD01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1927981 [UID] 7305078 [GenBank] 7359778 [RefSeq]

See Genome Information for Dorea formicigenerans

There are 91 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 20:10:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,427
CDS (total)::3,370
Genes (coding)::3,221
CDS (coding)::3,221
Genes (RNA)::57
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (23S)
tRNAs::48
ncRNAs::5
Pseudo Genes (total)::149
Pseudo Genes (ambiguous residues)::6 of 149
Pseudo Genes (frameshifted)::29 of 149
Pseudo Genes (incomplete)::115 of 149
Pseudo Genes (internal stop)::23 of 149
Pseudo Genes (multiple problems)::24 of 149
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,408,767
Total ungapped length3,408,333
Gaps between scaffolds0
Number of scaffolds47
Scaffold N50200,746
Scaffold L506
Number of contigs61
Contig N50196,636
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)47

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,408,767473,408,333200,746140

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Dorea formicigeneransDorea formicigenerans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025150245.1Dorea formicigeneranssuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025150245.1Dorea formicigeneranssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6075.5880.80
Best-match type98.6075.5880.80

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna