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ASM347554v1

Organism name:
Anaerobutyricum hallii (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AF31-17AC
BioSample:
SAMN09734576
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003475545.1 (latest)
RefSeq assembly accession:
GCF_003475545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRQO01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1928151 [UID] 7305418 [GenBank] 7360858 [RefSeq]

See Genome Information for Anaerobutyricum hallii

There are 75 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 21:12:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,522
CDS (total)::3,467
Genes (coding)::3,318
CDS (coding)::3,318
Genes (RNA)::55
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1 (16S)
partial rRNAs::1 (23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::149
Pseudo Genes (ambiguous residues)::16 of 149
Pseudo Genes (frameshifted)::50 of 149
Pseudo Genes (incomplete)::84 of 149
Pseudo Genes (internal stop)::23 of 149
Pseudo Genes (multiple problems)::23 of 149
CRISPR Arrays::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,800,170
Total ungapped length3,798,940
Gaps between scaffolds0
Number of scaffolds133
Scaffold N5060,979
Scaffold L5021
Number of contigs209
Contig N5040,679
Contig L5028
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)133

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,800,1701333,798,94060,979760

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Anaerobutyricum halliiAnaerobutyricum hallii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000173975.1Anaerobutyricum hallii DSM 3353suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000173975.1Anaerobutyricum halliisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6772.4383.62
Best-match type98.6772.4383.62

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna