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ASM347582v1

Organism name:
Parabacteroides merdae (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF31-17
BioSample:
SAMN09734575
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003475825.1 (latest)
RefSeq assembly accession:
GCF_003475825.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QRQP01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1928271 [UID] 7305688 [GenBank] 7669828 [RefSeq]

See Genome Information for Parabacteroides merdae

There are 268 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/03/2018 21:24:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,086
CDS (total)::4,010
Genes (coding)::3,821
CDS (coding)::3,821
Genes (RNA)::76
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
tRNAs::70
ncRNAs::2
Pseudo Genes (total)::189
Pseudo Genes (ambiguous residues)::13 of 189
Pseudo Genes (frameshifted)::87 of 189
Pseudo Genes (incomplete)::95 of 189
Pseudo Genes (internal stop)::46 of 189
Pseudo Genes (multiple problems)::44 of 189
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,721,275
Total ungapped length4,720,409
Gaps between scaffolds0
Number of scaffolds69
Scaffold N50183,203
Scaffold L5010
Number of contigs121
Contig N50101,957
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)69

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,721,275694,720,409183,203520

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides merdaeParabacteroides merdae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000154105.1Parabacteroides merdae ATCC 43184type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154105.1Parabacteroides merdaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8887.9293.65
Best-match type99.8887.9293.65

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna