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ASM347752v1

  • Anomalous assembly.
Organism name:
Ruminococcus sp. AF41-9 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AF41-9
BioSample:
SAMN09734696
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003477525.1 (latest)
RefSeq assembly accession:
GCF_003477525.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUDO01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1929141 [UID] 7307408 [GenBank] 7466198 [RefSeq]

See Genome Information for Ruminococcus sp. AF41-9

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2018 04:00:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,146
CDS (total)::4,061
Genes (coding)::3,579
CDS (coding)::3,579
Genes (RNA)::85
rRNAs::2, 6, 13 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::6, 13 (16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::482
Pseudo Genes (ambiguous residues)::0 of 482
Pseudo Genes (frameshifted)::342 of 482
Pseudo Genes (incomplete)::137 of 482
Pseudo Genes (internal stop)::25 of 482
Pseudo Genes (multiple problems)::20 of 482
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,347,292
Total ungapped length4,347,192
Gaps between scaffolds0
Number of scaffolds167
Scaffold N5066,465
Scaffold L5020
Number of contigs168
Contig N5066,465
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)167

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,347,2921674,347,19266,46510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcus sp. AF41-9Ruminococcus sp. AF41-9

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000153905.1Blautia obeumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.1413.5916.30

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna