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ASM347765v1

Organism name:
Firmicutes bacterium AF36-19BH (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AF36-19BH
BioSample:
SAMN09734644
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_003477655.1 (latest)
RefSeq assembly accession:
GCF_003477655.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUDT01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1929181 [UID] 7307498 [GenBank] 7361018 [RefSeq]

See Genome Information for Firmicutes bacterium AF36-19BH

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 19:47:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,249
CDS (total)::3,190
Genes (coding)::3,044
CDS (coding)::3,044
Genes (RNA)::59
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::52
ncRNAs::4
Pseudo Genes (total)::146
Pseudo Genes (ambiguous residues)::5 of 146
Pseudo Genes (frameshifted)::28 of 146
Pseudo Genes (incomplete)::112 of 146
Pseudo Genes (internal stop)::13 of 146
Pseudo Genes (multiple problems)::11 of 146
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,440,690
Total ungapped length3,440,033
Gaps between scaffolds0
Number of scaffolds93
Scaffold N50106,708
Scaffold L5012
Number of contigs126
Contig N50104,487
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)93

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,440,690933,440,033106,708330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Firmicutes bacterium AF36-19BHFirmicutes bacterium AF36-19BH

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025567525.1Gallintestinimicrobium propionicumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.5382.2574.76

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly