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Source database (GenBank or RefSeq) File type

ASM347776v1

Organism name:: Eubacterium sp. AF34-35BH (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: AF34-35BH
BioSample:: SAMN09734616
BioProject:: PRJNA482748
Submitter:: BGI
Date:: 2018/09/06
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_003477765.1 (latest)
RefSeq assembly accession:: GCF_003477765.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QUDZ01
Assembly method:: SOAPdenovo v. 2
Expected final version:: yes
Genome coverage:: 100x
Sequencing technology:: Illumina Hiseq

IDs: 1929251 [UID] 7307618 [GenBank] 7359958 [RefSeq]

See Genome Information for Eubacterium sp. AF34-35BH

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003477765.1	=	GCF_003477765.1	ASM347776v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/09/2018 19:21:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,390
CDS (total)::2,335
Genes (coding)::2,290
CDS (coding)::2,290
Genes (RNA)::55
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::45
Pseudo Genes (ambiguous residues)::6 of 45
Pseudo Genes (frameshifted)::13 of 45
Pseudo Genes (incomplete)::22 of 45
Pseudo Genes (internal stop)::8 of 45
Pseudo Genes (multiple problems)::4 of 45
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,669,882
Total ungapped length	2,669,361
Gaps between scaffolds	0
Number of scaffolds	23
Scaffold N50	305,981
Scaffold L50	4
Number of contigs	39
Contig N50	244,186
Contig L50	4
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	23

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	86.57	13.93	12.69

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ASM347776v1

See Genome Information for Eubacterium sp. AF34-35BH

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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