U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM347777v1

Organism name:
Clostridium sp. AF37-5AT (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AF37-5AT
BioSample:
SAMN09734667
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003477775.1 (latest)
RefSeq assembly accession:
GCF_003477775.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUDQ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1929261 [UID] 7307638 [GenBank] 7361238 [RefSeq]

See Genome Information for Clostridium sp. AF37-5AT

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 19:36:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,454
CDS (total)::3,396
Genes (coding)::3,246
CDS (coding)::3,246
Genes (RNA)::58
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::51
ncRNAs::4
Pseudo Genes (total)::150
Pseudo Genes (ambiguous residues)::7 of 150
Pseudo Genes (frameshifted)::41 of 150
Pseudo Genes (incomplete)::103 of 150
Pseudo Genes (internal stop)::24 of 150
Pseudo Genes (multiple problems)::22 of 150
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,615,760
Total ungapped length3,615,640
Gaps between scaffolds0
Number of scaffolds59
Scaffold N50128,539
Scaffold L509
Number of contigs71
Contig N50118,610
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)59

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,615,760593,615,640128,539120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium sp. AF37-5ATClostridium sp. AF37-5AT

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025149785.1Coprococcus comessuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.331.751.87

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena