U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM347786v1

Organism name:
Blautia sp. AF34-10 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AF34-10
BioSample:
SAMN09734607
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003477865.1 (latest)
RefSeq assembly accession:
GCF_003477865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUED01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1929301 [UID] 7307718 [GenBank] 7465638 [RefSeq]

See Genome Information for Blautia sp. AF34-10

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 20:18:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,417
CDS (total)::3,348
Genes (coding)::2,806
CDS (coding)::2,806
Genes (RNA)::69
rRNAs::1, 5, 8 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::5, 8 (16S, 23S)
tRNAs::51
ncRNAs::4
Pseudo Genes (total)::542
Pseudo Genes (ambiguous residues)::0 of 542
Pseudo Genes (frameshifted)::436 of 542
Pseudo Genes (incomplete)::113 of 542
Pseudo Genes (internal stop)::20 of 542
Pseudo Genes (multiple problems)::26 of 542
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,555,463
Total ungapped length3,555,463
Number of contigs104
Contig N50116,809
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)104

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,555,4631043,555,463116,80900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Blautia sp. AF34-10Blautia sp. AF34-10

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900104635.1Coprococcus phoceensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.493.573.53

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena