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ASM347799v1

Organism name:
Bacteroides sp. OF04-15BH (CFB group bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: OF04-15BH
BioSample:
SAMN09736708
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003477995.1 (latest)
RefSeq assembly accession:
GCF_003477995.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUEM01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1929381 [UID] 7307858 [GenBank] 7361478 [RefSeq]

See Genome Information for Bacteroides sp. OF04-15BH

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 20:32:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,236
CDS (total)::3,165
Genes (coding)::3,054
CDS (coding)::3,054
Genes (RNA)::71
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::2 (23S)
tRNAs::65
ncRNAs::2
Pseudo Genes (total)::111
Pseudo Genes (ambiguous residues)::13 of 111
Pseudo Genes (frameshifted)::58 of 111
Pseudo Genes (incomplete)::42 of 111
Pseudo Genes (internal stop)::24 of 111
Pseudo Genes (multiple problems)::24 of 111
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,751,971
Total ungapped length3,751,566
Gaps between scaffolds0
Number of scaffolds120
Scaffold N5095,296
Scaffold L5013
Number of contigs154
Contig N5095,296
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)120

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,751,9711203,751,56695,296340

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides sp. OF04-15BHBacteroides sp. OF04-15BH

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014287455.1Butyricimonas hoministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.772.992.06

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena