U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM347874v1

  • Anomalous assembly.
Organism name:
Coprobacillus sp. AF21-8LB (firmicutes)
Taxonomy check:
Failed
Infraspecific name:
Strain: AF21-8LB
BioSample:
SAMN09734436
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_003478745.1 (latest)
RefSeq assembly accession:
GCF_003478745.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUGA01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1929741 [UID] 7308598 [GenBank] 7361558 [RefSeq]

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 21:10:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,681
CDS (total)::2,631
Genes (coding)::2,530
CDS (coding)::2,530
Genes (RNA)::50
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::43
ncRNAs::4
Pseudo Genes (total)::101
Pseudo Genes (ambiguous residues)::11 of 101
Pseudo Genes (frameshifted)::34 of 101
Pseudo Genes (incomplete)::40 of 101
Pseudo Genes (internal stop)::34 of 101
Pseudo Genes (multiple problems)::17 of 101
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,556,473
Total ungapped length2,556,086
Gaps between scaffolds0
Number of scaffolds53
Scaffold N5098,522
Scaffold L508
Number of contigs71
Contig N5075,738
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)53

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,556,473532,556,08698,522180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Coprobacillus sp. AF21-8LBCoprobacillus sp. AF21-8LB

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003024675.1Faecalibacillus faecistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.2083.7584.76

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna