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ASM347896v1

Organism name:
Clostridium sp. AF20-17LB (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AF20-17LB
BioSample:
SAMN09734411
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003478965.1 (latest)
RefSeq assembly accession:
GCF_003478965.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUGG01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1929851 [UID] 7308818 [GenBank] 7362518 [RefSeq]

See Genome Information for Clostridium sp. AF20-17LB

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 22:10:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,226
CDS (total)::3,164
Genes (coding)::3,018
CDS (coding)::3,018
Genes (RNA)::62
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::54
ncRNAs::4
Pseudo Genes (total)::146
Pseudo Genes (ambiguous residues)::7 of 146
Pseudo Genes (frameshifted)::28 of 146
Pseudo Genes (incomplete)::102 of 146
Pseudo Genes (internal stop)::30 of 146
Pseudo Genes (multiple problems)::20 of 146
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,447,613
Total ungapped length3,447,443
Gaps between scaffolds0
Number of scaffolds66
Scaffold N50138,019
Scaffold L509
Number of contigs83
Contig N50138,019
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)66

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,447,613663,447,443138,019170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium sp. AF20-17LBClostridium sp. AF20-17LB

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000157995.1Holdemania filiformistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.032.432.20

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena