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ASM347914v1

Organism name:
Parabacteroides sp. AF18-52 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF18-52
BioSample:
SAMN09734370
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003479145.1 (latest)
RefSeq assembly accession:
GCF_003479145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUGR01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1929941 [UID] 7308998 [GenBank] 7670928 [RefSeq]

See Genome Information for Parabacteroides sp. AF18-52

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 23:20:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,957
CDS (total)::4,883
Genes (coding)::4,773
CDS (coding)::4,773
Genes (RNA)::74
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
tRNAs::67
ncRNAs::2
Pseudo Genes (total)::110
Pseudo Genes (ambiguous residues)::1 of 110
Pseudo Genes (frameshifted)::42 of 110
Pseudo Genes (incomplete)::65 of 110
Pseudo Genes (internal stop)::24 of 110
Pseudo Genes (multiple problems)::20 of 110
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,515,109
Total ungapped length6,515,019
Gaps between scaffolds0
Number of scaffolds49
Scaffold N50349,867
Scaffold L506
Number of contigs58
Contig N50318,243
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)49

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,515,109496,515,019349,86790

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides sp. AF18-52Parabacteroides sp. AF18-52

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014199665.1Parabacteroides faecistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.7690.8488.86

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna