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ASM347933v1

  • Anomalous assembly.
Organism name:
Clostridium sp. AF18-27 (firmicutes)
Taxonomy check:
Failed
Infraspecific name:
Strain: AF18-27
BioSample:
SAMN09734357
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_003479335.1 (latest)
RefSeq assembly accession:
GCF_003479335.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUGT01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1930041 [UID] 7309198 [GenBank] 7365218 [RefSeq]

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 23:58:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,859
CDS (total)::5,786
Genes (coding)::5,659
CDS (coding)::5,659
Genes (RNA)::73
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (23S)
tRNAs::65
ncRNAs::4
Pseudo Genes (total)::127
Pseudo Genes (ambiguous residues)::5 of 127
Pseudo Genes (frameshifted)::26 of 127
Pseudo Genes (incomplete)::87 of 127
Pseudo Genes (internal stop)::25 of 127
Pseudo Genes (multiple problems)::16 of 127
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,502,696
Total ungapped length6,502,335
Gaps between scaffolds0
Number of scaffolds53
Scaffold N50259,896
Scaffold L508
Number of contigs75
Contig N50242,482
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)53

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,502,696536,502,335259,896220

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium sp. AF18-27Clostridium sp. AF18-27

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003024655.1Enterocloster lavalensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.3781.4081.48

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna