U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM347951v1

Organism name:
Parabacteroides sp. AF14-59 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF14-59
BioSample:
SAMN09734270
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003479515.1 (latest)
RefSeq assembly accession:
GCF_003479515.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUHH01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1930131 [UID] 7309378 [GenBank] 7670428 [RefSeq]

See Genome Information for Parabacteroides sp. AF14-59

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 23:43:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,274
CDS (total)::5,201
Genes (coding)::5,095
CDS (coding)::5,095
Genes (RNA)::73
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::68
ncRNAs::2
Pseudo Genes (total)::106
Pseudo Genes (ambiguous residues)::6 of 106
Pseudo Genes (frameshifted)::39 of 106
Pseudo Genes (incomplete)::63 of 106
Pseudo Genes (internal stop)::16 of 106
Pseudo Genes (multiple problems)::17 of 106
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,881,152
Total ungapped length6,880,575
Gaps between scaffolds0
Number of scaffolds68
Scaffold N50211,589
Scaffold L5011
Number of contigs101
Contig N50143,432
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)68

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,881,152686,880,575211,589330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides sp. AF14-59Parabacteroides sp. AF14-59

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014199665.1Parabacteroides faecistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.1882.6885.41

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna