U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM347976v1

Organism name:
Ruminococcaceae bacterium AF10-16 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AF10-16
BioSample:
SAMN09734199
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_003479765.1 (latest)
RefSeq assembly accession:
GCF_003479765.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUHT01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1930251 [UID] 7309628 [GenBank] 7362498 [RefSeq]

See Genome Information for Ruminococcaceae bacterium AF10-16

Pathogen Detection Resources

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 23:00:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,063
CDS (total)::3,013
Genes (coding)::2,634
CDS (coding)::2,634
Genes (RNA)::50
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::43
ncRNAs::4
Pseudo Genes (total)::379
Pseudo Genes (ambiguous residues)::0 of 379
Pseudo Genes (frameshifted)::306 of 379
Pseudo Genes (incomplete)::71 of 379
Pseudo Genes (internal stop)::19 of 379
Pseudo Genes (multiple problems)::16 of 379
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,946,554
Total ungapped length2,946,019
Gaps between scaffolds0
Number of scaffolds125
Scaffold N5050,245
Scaffold L5019
Number of contigs127
Contig N5050,245
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)125

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,946,5541252,946,01950,24520

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcaceae bacterium AF10-16Ruminococcaceae bacterium AF10-16

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014297285.1Dysosmobacter segnissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.1911.008.83

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena