U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM347988v1

  • Anomalous assembly.
Organism name:
Blautia sp. AM46-5 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM46-5
BioSample:
SAMN09736596
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003479885.1 (latest)
RefSeq assembly accession:
GCF_003479885.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUHZ01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1930311 [UID] 7309738 [GenBank] 7364578 [RefSeq]

See Genome Information for Blautia sp. AM46-5

Pathogen Detection Resources

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 23:06:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,617
CDS (total)::3,537
Genes (coding)::3,141
CDS (coding)::3,141
Genes (RNA)::80
rRNAs::3, 6, 7 (5S, 16S, 23S)
complete rRNAs::3 (5S)
partial rRNAs::6, 7 (16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::396
Pseudo Genes (ambiguous residues)::0 of 396
Pseudo Genes (frameshifted)::290 of 396
Pseudo Genes (incomplete)::107 of 396
Pseudo Genes (internal stop)::22 of 396
Pseudo Genes (multiple problems)::20 of 396
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,766,806
Total ungapped length3,766,341
Gaps between scaffolds0
Number of scaffolds124
Scaffold N5067,360
Scaffold L5018
Number of contigs125
Contig N5067,360
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)124

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced3,766,8061243,766,34167,36010

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Blautia sp. AM46-5Blautia sp. AM46-5

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009696065.1Oliverpabstia intestinalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.4065.8176.66

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%