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Source database (GenBank or RefSeq) File type

ASM347989v1

Anomalous assembly.

Organism name:

Ruminococcus sp. AM45-9BH (firmicutes)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: AM45-9BH

BioSample:

SAMN09736589

BioProject:

PRJNA482748

Submitter:

BGI

Date:

2018/09/06

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Assembly anomaly:

contaminated

Excluded from RefSeq:

contaminated
many frameshifted proteins

GenBank assembly accession:

GCA_003479895.1 (latest)

RefSeq assembly accession:

GCF_003479895.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

QUID01

Assembly method:

SPAdes v. 3.1.0

Expected final version:

yes

Genome coverage:

100x

Sequencing technology:

IonProton

IDs: 1930321 [UID] 7309758 [GenBank] 8361688 [RefSeq]

See Genome Information for Ruminococcus sp. AM45-9BH

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003479895.1	=	GCF_003479895.1	ASM347989v1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/09/2018 23:49:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,400
CDS (total)::4,318
Genes (coding)::3,713
CDS (coding)::3,713
Genes (RNA)::82
rRNAs::1, 9 (16S, 23S)
partial rRNAs::1, 9 (16S, 23S)
tRNAs::68
ncRNAs::4
Pseudo Genes (total)::605
Pseudo Genes (ambiguous residues)::0 of 605
Pseudo Genes (frameshifted)::456 of 605
Pseudo Genes (incomplete)::151 of 605
Pseudo Genes (internal stop)::24 of 605
Pseudo Genes (multiple problems)::22 of 605
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,553,858
Total ungapped length	4,553,503
Gaps between scaffolds	0
Number of scaffolds	144
Scaffold N50	77,036
Scaffold L50	16
Number of contigs	145
Contig N50	77,036
Contig L50	16
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	144

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	97.36	66.56	64.69

Assembly

Genome Assembly

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ASM347989v1

See Genome Information for Ruminococcus sp. AM45-9BH

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Taxonomy Check Data

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Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

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