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ASM348000v1

  • Anomalous assembly.
Organism name:
Blautia sp. AM46-3MH (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM46-3MH
BioSample:
SAMN09736595
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003480005.1 (latest)
RefSeq assembly accession:
GCF_003480005.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUIA01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1930371 [UID] 7309858 [GenBank] 7364418 [RefSeq]

See Genome Information for Blautia sp. AM46-3MH

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 23:46:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,593
CDS (total)::3,510
Genes (coding)::2,998
CDS (coding)::2,998
Genes (RNA)::83
rRNAs::3, 7, 9 (5S, 16S, 23S)
complete rRNAs::3 (5S)
partial rRNAs::7, 9 (16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::512
Pseudo Genes (ambiguous residues)::0 of 512
Pseudo Genes (frameshifted)::408 of 512
Pseudo Genes (incomplete)::112 of 512
Pseudo Genes (internal stop)::21 of 512
Pseudo Genes (multiple problems)::26 of 512
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,671,391
Total ungapped length3,671,391
Number of contigs118
Contig N5087,719
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)118

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,671,3911183,671,39187,71900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Blautia sp. AM46-3MHBlautia sp. AM46-3MH

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009696065.1Oliverpabstia intestinalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.4067.4876.64

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%