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ASM348014v1

Organism name:
Ruminococcus sp. AM42-11 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM42-11
BioSample:
SAMN09736538
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003480145.1 (latest)
RefSeq assembly accession:
GCF_003480145.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUIO01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1930441 [UID] 7309998 [GenBank] 7362138 [RefSeq]

See Genome Information for Ruminococcus sp. AM42-11

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2018 00:20:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,521
CDS (total)::4,429
Genes (coding)::3,920
CDS (coding)::3,920
Genes (RNA)::92
rRNAs::2, 8, 10 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 8, 10 (5S, 16S, 23S)
tRNAs::68
ncRNAs::4
Pseudo Genes (total)::509
Pseudo Genes (ambiguous residues)::0 of 509
Pseudo Genes (frameshifted)::369 of 509
Pseudo Genes (incomplete)::148 of 509
Pseudo Genes (internal stop)::31 of 509
Pseudo Genes (multiple problems)::36 of 509
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,698,861
Total ungapped length4,698,861
Number of contigs106
Contig N5099,311
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)106

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,698,8611064,698,86199,31100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcus sp. AM42-11Ruminococcus sp. AM42-11

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009707925.1Blautia lutisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.3310.4913.28

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna