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ASM348025v1

Organism name:
Erysipelatoclostridium sp. AM42-17 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM42-17
BioSample:
SAMN09736545
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003480255.1 (latest)
RefSeq assembly accession:
GCF_003480255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUIN01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1930501 [UID] 7310118 [GenBank] 7362558 [RefSeq]

See Genome Information for Erysipelatoclostridium sp. AM42-17

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/09/2018 23:50:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,175
CDS (total)::2,123
Genes (coding)::2,067
CDS (coding)::2,067
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::4
Pseudo Genes (total)::56
Pseudo Genes (ambiguous residues)::5 of 56
Pseudo Genes (frameshifted)::24 of 56
Pseudo Genes (incomplete)::11 of 56
Pseudo Genes (internal stop)::25 of 56
Pseudo Genes (multiple problems)::9 of 56
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,159,993
Total ungapped length2,159,883
Gaps between scaffolds0
Number of scaffolds57
Scaffold N5068,890
Scaffold L5010
Number of contigs67
Contig N5060,582
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)57

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,159,993572,159,88368,890100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Erysipelatoclostridium sp. AM42-17Erysipelatoclostridium sp. AM42-17

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003024675.1Faecalibacillus faecistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.5024.2420.73

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna