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ASM348037v1

  • Anomalous assembly.
Organism name:
Ruminococcus sp. AM32-17LB (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM32-17LB
BioSample:
SAMN09736439
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003480375.1 (latest)
RefSeq assembly accession:
GCF_003480375.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUIY01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1930561 [UID] 7310238 [GenBank] 7362198 [RefSeq]

See Genome Information for Ruminococcus sp. AM32-17LB

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2018 00:55:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,782
CDS (total)::3,724
Genes (coding)::3,539
CDS (coding)::3,539
Genes (RNA)::58
rRNAs::2, 1, 2 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 23S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::185
Pseudo Genes (ambiguous residues)::20 of 185
Pseudo Genes (frameshifted)::55 of 185
Pseudo Genes (incomplete)::111 of 185
Pseudo Genes (internal stop)::25 of 185
Pseudo Genes (multiple problems)::24 of 185
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,983,170
Total ungapped length3,962,311
Gaps between scaffolds0
Number of scaffolds100
Scaffold N50128,536
Scaffold L5012
Number of contigs178
Contig N5083,461
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)100

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,983,1701003,962,311128,536780

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcus sp. AM32-17LBRuminococcus sp. AM32-17LB

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025148125.1Blautia wexleraesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.4975.2563.65

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%