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ASM348048v1

  • Anomalous assembly.
Organism name:
Butyricicoccus sp. AM29-23AC (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM29-23AC
BioSample:
SAMN09736400
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003480485.1 (latest)
RefSeq assembly accession:
GCF_003480485.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUJF01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1930611 [UID] 7310348 [GenBank] 7364898 [RefSeq]

See Genome Information for Butyricicoccus sp. AM29-23AC

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2018 00:44:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,167
CDS (total)::3,089
Genes (coding)::2,720
CDS (coding)::2,720
Genes (RNA)::78
rRNAs::4, 1, 3 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 2 (5S, 23S)
tRNAs::66
ncRNAs::4
Pseudo Genes (total)::369
Pseudo Genes (ambiguous residues)::0 of 369
Pseudo Genes (frameshifted)::274 of 369
Pseudo Genes (incomplete)::92 of 369
Pseudo Genes (internal stop)::22 of 369
Pseudo Genes (multiple problems)::19 of 369
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,072,050
Total ungapped length3,071,560
Gaps between scaffolds0
Number of scaffolds115
Scaffold N5093,072
Scaffold L5011
Number of contigs116
Contig N5093,072
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)115

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,072,0501153,071,56093,07210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Butyricicoccus sp. AM29-23ACButyricicoccus sp. AM29-23AC

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014288055.1Agathobaculum hoministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.3766.8880.15

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%