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Source database (GenBank or RefSeq) File type

ASM348085v1

Organism name:: Butyricicoccus sp. TM10-16AC (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: TM10-16AC
BioSample:: SAMN09737023
BioProject:: PRJNA482748
Submitter:: BGI
Date:: 2018/09/06
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_003480855.1 (latest)
RefSeq assembly accession:: GCF_003480855.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QUKA01
Assembly method:: SOAPdenovo v. 2
Expected final version:: yes
Genome coverage:: 100x
Sequencing technology:: Illumina Hiseq

IDs: 1930801 [UID] 7310718 [GenBank] 7365178 [RefSeq]

See Genome Information for Butyricicoccus sp. TM10-16AC

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003480855.1	=	GCF_003480855.1	ASM348085v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/10/2018 01:24:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,689
CDS (total)::2,622
Genes (coding)::2,533
CDS (coding)::2,533
Genes (RNA)::67
rRNAs::2, 2, 3 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 2, 3 (5S, 16S, 23S)
tRNAs::56
ncRNAs::4
Pseudo Genes (total)::89
Pseudo Genes (ambiguous residues)::1 of 89
Pseudo Genes (frameshifted)::35 of 89
Pseudo Genes (incomplete)::53 of 89
Pseudo Genes (internal stop)::14 of 89
Pseudo Genes (multiple problems)::13 of 89
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,870,723
Total ungapped length	2,870,623
Gaps between scaffolds	0
Number of scaffolds	22
Scaffold N50	311,908
Scaffold L50	3
Number of contigs	32
Contig N50	266,276
Contig L50	4
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	22

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	96.93	83.63	80.18

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ASM348085v1

See Genome Information for Butyricicoccus sp. TM10-16AC

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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