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ASM348090v1

Organism name:
Blautia sp. AM28-27 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AM28-27
BioSample:
SAMN09736377
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003480905.1 (latest)
RefSeq assembly accession:
GCF_003480905.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUJK01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1930821 [UID] 7310768 [GenBank] 7365298 [RefSeq]

See Genome Information for Blautia sp. AM28-27

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2018 00:25:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,572
CDS (total)::3,507
Genes (coding)::3,344
CDS (coding)::3,344
Genes (RNA)::65
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::163
Pseudo Genes (ambiguous residues)::2 of 163
Pseudo Genes (frameshifted)::43 of 163
Pseudo Genes (incomplete)::114 of 163
Pseudo Genes (internal stop)::29 of 163
Pseudo Genes (multiple problems)::23 of 163
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,808,541
Total ungapped length3,808,251
Gaps between scaffolds0
Number of scaffolds48
Scaffold N50250,580
Scaffold L504
Number of contigs59
Contig N50184,049
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)48

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,808,541483,808,251250,580110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Blautia sp. AM28-27Blautia sp. AM28-27

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014384885.1Ligaoa zhengdingensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.262.042.63

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena