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ASM348138v1

  • Anomalous assembly.
Organism name:
Firmicutes bacterium OM07-11 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: OM07-11
BioSample:
SAMN09736831
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
  • genus undefined
GenBank assembly accession:
GCA_003481385.1 (latest)
RefSeq assembly accession:
GCF_003481385.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QULB01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1931061 [UID] 7311258 [GenBank] 7363838 [RefSeq]

See Genome Information for Firmicutes bacterium OM07-11

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2018 02:32:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,571
CDS (total)::3,508
Genes (coding)::3,301
CDS (coding)::3,301
Genes (RNA)::63
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
tRNAs::56
ncRNAs::5
Pseudo Genes (total)::207
Pseudo Genes (ambiguous residues)::39 of 207
Pseudo Genes (frameshifted)::67 of 207
Pseudo Genes (incomplete)::108 of 207
Pseudo Genes (internal stop)::31 of 207
Pseudo Genes (multiple problems)::36 of 207
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,688,237
Total ungapped length3,686,206
Gaps between scaffolds0
Number of scaffolds94
Scaffold N5069,026
Scaffold L5012
Number of contigs193
Contig N5044,559
Contig L5023
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)94

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,688,237943,686,20669,026990

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Firmicutes bacterium OM07-11Firmicutes bacterium OM07-11

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014287355.1Ruminococcus hoministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.2769.0673.70

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelineage-matchna