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ASM348150v1

Organism name:
Clostridium sp. OM05-5BH (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: OM05-5BH
BioSample:
SAMN09736804
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003481505.1 (latest)
RefSeq assembly accession:
GCF_003481505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QULJ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1931121 [UID] 7311358 [GenBank] 7363658 [RefSeq]

See Genome Information for Clostridium sp. OM05-5BH

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2018 02:32:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,803
CDS (total)::2,744
Genes (coding)::2,628
CDS (coding)::2,628
Genes (RNA)::59
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
tRNAs::53
ncRNAs::4
Pseudo Genes (total)::116
Pseudo Genes (ambiguous residues)::5 of 116
Pseudo Genes (frameshifted)::27 of 116
Pseudo Genes (incomplete)::84 of 116
Pseudo Genes (internal stop)::15 of 116
Pseudo Genes (multiple problems)::15 of 116
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,036,263
Total ungapped length3,036,042
Gaps between scaffolds0
Number of scaffolds39
Scaffold N50318,849
Scaffold L504
Number of contigs57
Contig N50234,600
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)39

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,036,263393,036,042318,849180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium sp. OM05-5BHClostridium sp. OM05-5BH

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003024715.1Clostridium fessumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.5188.3881.88

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna