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ASM348165v1

  • Anomalous assembly.
Organism name:
Ruminococcus sp. OM05-10BH (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: OM05-10BH
BioSample:
SAMN09736793
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_003481655.1 (latest)
RefSeq assembly accession:
GCF_003481655.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QULK01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1931201 [UID] 7311518 [GenBank] 7363058 [RefSeq]

See Genome Information for Ruminococcus sp. OM05-10BH

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2018 02:36:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,758
CDS (total)::3,692
Genes (coding)::3,572
CDS (coding)::3,572
Genes (RNA)::66
rRNAs::1, 2 (16S, 23S)
complete rRNAs::1 (16S)
partial rRNAs::2 (23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::120
Pseudo Genes (ambiguous residues)::3 of 120
Pseudo Genes (frameshifted)::35 of 120
Pseudo Genes (incomplete)::74 of 120
Pseudo Genes (internal stop)::25 of 120
Pseudo Genes (multiple problems)::16 of 120
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,837,179
Total ungapped length3,837,069
Gaps between scaffolds0
Number of scaffolds67
Scaffold N50122,641
Scaffold L5011
Number of contigs78
Contig N50115,645
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)67

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,837,179673,837,069122,641110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruminococcus sp. OM05-10BHRuminococcus sp. OM05-10BH

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_027924685.1Sellimonas catenatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.2769.5172.52

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchcoverage is less than 80%