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ASM348176v1

Organism name:
Clostridium sp. OM04-12AA (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: OM04-12AA
BioSample:
SAMN09736779
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003481765.1 (latest)
RefSeq assembly accession:
GCF_003481765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QULR01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1931251 [UID] 7311628 [GenBank] 7364038 [RefSeq]

See Genome Information for Clostridium sp. OM04-12AA

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2018 02:58:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,835
CDS (total)::3,757
Genes (coding)::3,217
CDS (coding)::3,217
Genes (RNA)::78
rRNAs::2, 7, 10 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 7, 10 (5S, 16S, 23S)
tRNAs::55
ncRNAs::4
Pseudo Genes (total)::540
Pseudo Genes (ambiguous residues)::0 of 540
Pseudo Genes (frameshifted)::461 of 540
Pseudo Genes (incomplete)::82 of 540
Pseudo Genes (internal stop)::21 of 540
Pseudo Genes (multiple problems)::24 of 540
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,973,415
Total ungapped length3,973,209
Gaps between scaffolds0
Number of scaffolds119
Scaffold N5078,575
Scaffold L5016
Number of contigs120
Contig N5078,575
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)119

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,973,4151193,973,20978,57510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium sp. OM04-12AAClostridium sp. OM04-12AA

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900104635.1Coprococcus phoceensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.802.212.44

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena