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ASM348184v1

Organism name:
Butyricicoccus sp. OF13-6 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: OF13-6
BioSample:
SAMN09736740
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003481845.1 (latest)
RefSeq assembly accession:
GCF_003481845.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QULY01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1931301 [UID] 7311718 [GenBank] 7464538 [RefSeq]

See Genome Information for Butyricicoccus sp. OF13-6

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2018 02:48:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,895
CDS (total)::2,821
Genes (coding)::2,533
CDS (coding)::2,533
Genes (RNA)::74
rRNAs::6, 5, 1 (5S, 16S, 23S)
complete rRNAs::6, 1, 1 (5S, 16S, 23S)
partial rRNAs::4 (16S)
tRNAs::58
ncRNAs::4
Pseudo Genes (total)::288
Pseudo Genes (ambiguous residues)::0 of 288
Pseudo Genes (frameshifted)::243 of 288
Pseudo Genes (incomplete)::42 of 288
Pseudo Genes (internal stop)::16 of 288
Pseudo Genes (multiple problems)::12 of 288
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,930,359
Total ungapped length2,930,359
Number of contigs82
Contig N5076,766
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)82

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,930,359822,930,35976,76600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Butyricicoccus sp. OF13-6Butyricicoccus sp. OF13-6

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016586375.1Butyricicoccus faecihoministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.4075.0172.62

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna