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ASM348200v1

  • Anomalous assembly.
Organism name:
Odoribacter sp. OF09-27XD (CFB group bacteria)
Taxonomy check:
Failed
Infraspecific name:
Strain: OF09-27XD
BioSample:
SAMN09736729
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/09/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
unverified source organism
Excluded from RefSeq:
  • unverified source organism
GenBank assembly accession:
GCA_003482005.1 (latest)
RefSeq assembly accession:
GCF_003482005.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QUMF01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
IonProton

IDs: 1931401 [UID] 7311898 [GenBank] 7414308 [RefSeq]

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2018 03:22:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,532
CDS (total)::3,473
Genes (coding)::3,095
CDS (coding)::3,095
Genes (RNA)::59
rRNAs::3, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 1 (5S, 16S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::378
Pseudo Genes (ambiguous residues)::0 of 378
Pseudo Genes (frameshifted)::343 of 378
Pseudo Genes (incomplete)::36 of 378
Pseudo Genes (internal stop)::11 of 378
Pseudo Genes (multiple problems)::11 of 378
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,108,052
Total ungapped length4,107,647
Gaps between scaffolds0
Number of scaffolds158
Scaffold N5065,486
Scaffold L5021
Number of contigs159
Contig N5065,486
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)158

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,108,0521584,107,64765,48610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Odoribacter sp. OF09-27XDOdoribacter sp. OF09-27XD

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900091655.1Culturomica massiliensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.3289.2183.26

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna