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ASM360270v1

Organism name:
Bacteroides sp. AM16-13 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AM16-13
BioSample:
SAMN09734820
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/08/31
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003602705.1 (latest)
RefSeq assembly accession:
GCF_003602705.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QTLK01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1996831 [UID] 7510378 [GenBank] 7531048 [RefSeq]

See Genome Information for Bacteroides sp. AM16-13

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/07/2018 20:23:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,743
CDS (total)::4,670
Genes (coding)::4,529
CDS (coding)::4,529
Genes (RNA)::73
rRNAs::1, 2, 4 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::1, 4 (16S, 23S)
tRNAs::64
ncRNAs::2
Pseudo Genes (total)::141
Pseudo Genes (ambiguous residues)::6 of 141
Pseudo Genes (frameshifted)::61 of 141
Pseudo Genes (incomplete)::83 of 141
Pseudo Genes (internal stop)::25 of 141
Pseudo Genes (multiple problems)::30 of 141
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,038,626
Total ungapped length6,038,222
Gaps between scaffolds0
Number of scaffolds91
Scaffold N50182,949
Scaffold L5012
Number of contigs129
Contig N50138,955
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)91

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,038,626916,038,222182,949380

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides sp. AM16-13Bacteroides sp. AM16-13

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000210075.1Bacteroides xylanisolvenssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.4371.0273.93

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna