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ASM360299v1

Organism name:
Bacteroides sp. AF25-38AC (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AF25-38AC
BioSample:
SAMN09734502
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/10/01
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003602995.1 (latest)
RefSeq assembly accession:
GCF_003602995.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QTMD01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1996991 [UID] 7510688 [GenBank] 7532848 [RefSeq]

See Genome Information for Bacteroides sp. AF25-38AC

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/07/2018 20:26:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,374
CDS (total)::4,309
Genes (coding)::4,164
CDS (coding)::4,164
Genes (RNA)::65
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::59
ncRNAs::3
Pseudo Genes (total)::145
Pseudo Genes (ambiguous residues)::4 of 145
Pseudo Genes (frameshifted)::65 of 145
Pseudo Genes (incomplete)::76 of 145
Pseudo Genes (internal stop)::25 of 145
Pseudo Genes (multiple problems)::23 of 145
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,074,582
Total ungapped length5,074,402
Gaps between scaffolds0
Number of scaffolds94
Scaffold N50135,424
Scaffold L5013
Number of contigs112
Contig N50126,432
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)94

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,074,582945,074,402135,424180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides sp. AF25-38ACBacteroides sp. AF25-38AC

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000154205.1Bacteroides uniformissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.7276.0581.80

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna