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ASM360319v1

Organism name:
Erysipelotrichaceae bacterium AF19-24AC (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AF19-24AC
BioSample:
SAMN09734392
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/10/01
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_003603195.1 (latest)
RefSeq assembly accession:
GCF_003603195.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QVGT01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1997081 [UID] 7510858 [GenBank] 7531288 [RefSeq]

See Genome Information for Erysipelotrichaceae bacterium AF19-24AC

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/16/2018 20:00:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,407
CDS (total)::4,354
Genes (coding)::4,228
CDS (coding)::4,228
Genes (RNA)::53
rRNAs::2, 1 (16S, 23S)
complete rRNAs::1 (23S)
partial rRNAs::2 (16S)
tRNAs::47
ncRNAs::3
Pseudo Genes (total)::126
Pseudo Genes (ambiguous residues)::14 of 126
Pseudo Genes (frameshifted)::51 of 126
Pseudo Genes (incomplete)::53 of 126
Pseudo Genes (internal stop)::31 of 126
Pseudo Genes (multiple problems)::22 of 126
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,623,182
Total ungapped length4,622,647
Gaps between scaffolds0
Number of scaffolds94
Scaffold N50114,904
Scaffold L5012
Number of contigs125
Contig N50106,201
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)94

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,623,182944,622,647114,904310

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Erysipelotrichaceae bacterium AF19-24ACErysipelotrichaceae bacterium AF19-24AC

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_018458805.1[Clostridium] innocuumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.5741.4141.14

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna