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ASM360334v1

Organism name:
Faecalibacterium sp. AM43-5AT (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: AM43-5AT
BioSample:
SAMN09736571
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/10/01
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_003603345.1 (latest)
RefSeq assembly accession:
GCF_003603345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QVGZ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1997151 [UID] 7510998 [GenBank] 7529908 [RefSeq]

See Genome Information for Faecalibacterium sp. AM43-5AT

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/16/2018 20:20:19
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,933
CDS (total)::2,865
Genes (coding)::2,721
CDS (coding)::2,721
Genes (RNA)::68
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::2, 1 (16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::144
Pseudo Genes (ambiguous residues)::5 of 144
Pseudo Genes (frameshifted)::34 of 144
Pseudo Genes (incomplete)::111 of 144
Pseudo Genes (internal stop)::14 of 144
Pseudo Genes (multiple problems)::19 of 144
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,939,397
Total ungapped length2,939,101
Gaps between scaffolds0
Number of scaffolds44
Scaffold N50229,815
Scaffold L504
Number of contigs61
Contig N50154,406
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)44

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,939,397442,939,101229,815170

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Faecalibacterium sp. AM43-5ATFaecalibacterium sp. AM43-5AT

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_032584275.1Faecalibacterium prausnitziisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.1054.4352.24

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna