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Source database (GenBank or RefSeq) File type

ASM360358v1

Anomalous assembly.

Organism name:

Bacteroides sp. AM28-6 (CFB group bacteria)

Taxonomy check:

Failed

Infraspecific name:

Strain: AM28-6

BioSample:

SAMN09736384

BioProject:

PRJNA482748

Submitter:

BGI

Date:

2018/10/01

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Assembly anomaly:

unverified source organism

Excluded from RefSeq:

unverified source organism

GenBank assembly accession:

GCA_003603585.1 (latest)

RefSeq assembly accession:

GCF_003603585.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

QTNJ01

Assembly method:

SOAPdenovo v. 2

Expected final version:

yes

Genome coverage:

100x

Sequencing technology:

Illumina Hiseq

IDs: 1997291 [UID] 7511278 [GenBank] 7527028 [RefSeq]

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003603585.1	=	GCF_003603585.1	ASM360358v1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/07/2018 22:07:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,790
CDS (total)::4,716
Genes (coding)::4,525
CDS (coding)::4,525
Genes (RNA)::74
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::69
ncRNAs::2
Pseudo Genes (total)::191
Pseudo Genes (ambiguous residues)::15 of 191
Pseudo Genes (frameshifted)::107 of 191
Pseudo Genes (incomplete)::79 of 191
Pseudo Genes (internal stop)::46 of 191
Pseudo Genes (multiple problems)::51 of 191
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,593,575
Total ungapped length	5,592,729
Gaps between scaffolds	0
Number of scaffolds	108
Scaffold N50	248,896
Scaffold L50	8
Number of contigs	162
Contig N50	205,589
Contig L50	11
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	108

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	99.35	82.72	82.25

Assembly

Genome Assembly

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ASM360358v1

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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Taxonomy Check Data

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Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result