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Source database (GenBank or RefSeq) File type

ASM360359v1

Organism name:: Streptococcus sp. AM28-20 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: AM28-20
BioSample:: SAMN09736372
BioProject:: PRJNA482748
Submitter:: BGI
Date:: 2018/10/01
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_003603595.1 (latest)
RefSeq assembly accession:: GCF_003603595.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QTNK01
Assembly method:: SOAPdenovo v. 2
Expected final version:: yes
Genome coverage:: 100x
Sequencing technology:: Illumina Hiseq

IDs: 1997271 [UID] 7511238 [GenBank] 7795078 [RefSeq]

See Genome Information for Streptococcus sp. AM28-20

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003603595.1	=	GCF_003603595.1	ASM360359v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::08/07/2018 21:10:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,053
CDS (total)::2,009
Genes (coding)::1,899
CDS (coding)::1,899
Genes (RNA)::44
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::1 (16S)
tRNAs::38
ncRNAs::3
Pseudo Genes (total)::110
Pseudo Genes (ambiguous residues)::0 of 110
Pseudo Genes (frameshifted)::12 of 110
Pseudo Genes (incomplete)::92 of 110
Pseudo Genes (internal stop)::17 of 110
Pseudo Genes (multiple problems)::9 of 110
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,032,489
Total ungapped length	2,032,479
Gaps between scaffolds	0
Number of scaffolds	6
Scaffold N50	614,179
Scaffold L50	2
Number of contigs	7
Contig N50	614,179
Contig L50	2
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	6

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	96.30	86.38	87.37

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ASM360359v1

See Genome Information for Streptococcus sp. AM28-20

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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