U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM360382v1

  • Anomalous assembly.
Organism name:
Clostridiales bacterium TF09-2AC (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: TF09-2AC
BioSample:
SAMN09736926
BioProject:
PRJNA482748
Submitter:
BGI
Date:
2018/10/01
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
  • genus undefined
GenBank assembly accession:
GCA_003603825.1 (latest)
RefSeq assembly accession:
GCF_003603825.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
QVHJ01
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
100x
Sequencing technology:
Illumina Hiseq

IDs: 1997401 [UID] 7511498 [GenBank] 7527968 [RefSeq]

See Genome Information for Clostridiales bacterium TF09-2AC

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/16/2018 21:14:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,872
CDS (total)::5,805
Genes (coding)::5,658
CDS (coding)::5,658
Genes (RNA)::67
rRNAs::1, 1 (16S, 23S)
complete rRNAs::1 (16S)
partial rRNAs::1 (23S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::147
Pseudo Genes (ambiguous residues)::5 of 147
Pseudo Genes (frameshifted)::44 of 147
Pseudo Genes (incomplete)::105 of 147
Pseudo Genes (internal stop)::23 of 147
Pseudo Genes (multiple problems)::27 of 147
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,431,848
Total ungapped length6,431,698
Gaps between scaffolds0
Number of scaffolds36
Scaffold N50290,159
Scaffold L507
Number of contigs50
Contig N50233,147
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)36

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,431,848366,431,698290,159140

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridiales bacterium TF09-2ACClostridiales bacterium TF09-2AC

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900566185.1Lachnoclostridium pacaensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.9536.2587.25

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly