U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM364905v1

Organism name:
Candidatus Woesearchaeota archaeon (archaea)
Taxonomy check:
Inconclusive
Isolate:
B100_G9
BioSample:
SAMN09215307
BioProject:
PRJNA362212
Submitter:
The University of Texas at Austin
Date:
2018/10/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_003649055.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
QMQU01
Assembly method:
megahit v. 1.0.6
Expected final version:
yes
Genome coverage:
17.7251184834123x
Sequencing technology:
Illumina HiSeq

IDs: 2018411 [UID] 7576528 [GenBank]

See Genome Information for Candidatus Woesearchaeota archaeon

There are 671 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/30/2018 05:06:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,298
CDS (total)::1,268
Genes (coding)::1,262
CDS (coding)::1,262
Genes (RNA)::30
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (5S)
tRNAs::24
ncRNAs::2
Pseudo Genes (total)::6
Pseudo Genes (ambiguous residues)::0 of 6
Pseudo Genes (frameshifted)::1 of 6
Pseudo Genes (incomplete)::5 of 6
Pseudo Genes (internal stop)::0 of 6
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,137,219
Total ungapped length1,137,219
Number of contigs211
Contig N506,161
Contig L5055
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)211

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,137,2192111,137,2196,16100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Woesearchaeota archaeonCandidatus Woesearchaeota archaeon

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana