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dark-eyed_junco_22Sep2020_assembly

Organism name:
Junco hyemalis (dark-eyed junco)
Infraspecific name:
Ecotype: carolinensis
BioSample:
SAMN10120167
BioProject:
PRJNA493001
Submitter:
National Museum of Natural Sciences
Date:
2022/06/02
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_003829775.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
QZWM02
Assembly method:
HiRise v. JAN-2016
Expected final version:
no
Genome coverage:
66.67x
Sequencing technology:
Illumina NovaSeq

IDs: 12913201 [UID] 33729848 [GenBank]

See Genome Information for Junco hyemalis

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length1,031,540,353
Total ungapped length999,228,293
Gaps between scaffolds0
Number of scaffolds4,685
Scaffold N5071,317,294
Scaffold L505
Number of contigs52,253
Contig N5075,757
Contig L503,470
Total number of chromosomes and plasmids32
Number of component sequences (WGS or clone)4,685

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_003830045.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM042573.1n/an/a0
Chromosome 1ACM042574.1n/an/a0
Chromosome 2CM042575.1n/an/a0
Chromosome 3CM042576.1n/an/a1
Chromosome 4CM042577.1n/an/a0
Chromosome 4ACM042578.1n/an/a0
Chromosome 5CM042579.1n/an/a0
Chromosome 6CM042580.1n/an/a0
Chromosome 7CM042581.1n/an/a0
Chromosome 8CM042582.1n/an/a0
Chromosome 9CM042583.1n/an/a0
Chromosome 10CM042584.1n/an/a0
Chromosome 11CM042585.1n/an/a0
Chromosome 12CM042586.1n/an/a0
Chromosome 13CM042587.1n/an/a0
Chromosome 14CM042588.1n/an/a0
Chromosome 15CM042589.1n/an/a0
Chromosome 17CM042590.1n/an/a0
Chromosome 18CM042591.1n/an/a0
Chromosome 19CM042592.1n/an/a0
Chromosome 20CM042593.1n/an/a0
Chromosome 21CM042594.1n/an/a0
Chromosome 22CM042595.1n/an/a0
Chromosome 23CM042596.1n/an/a0
Chromosome 24CM042597.1n/an/a0
Chromosome 25CM042598.1n/an/a0
Chromosome 26CM042599.1n/an/a0
Chromosome 27CM042600.1n/an/a0
Chromosome 28CM042601.1n/an/a0
Chromosome Wn/an/an/a280
Chromosome ZCM042602.1n/an/a38
unplacedn/an/an/a4,335

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,031,523,5704,684999,211,51071,317,29447,5680
Chromosome 1Assembled molecule115,491,4741112,517,324115,491,4743,4890
Chromosome 1AAssembled molecule72,056,337170,294,51072,056,3372,0920
Chromosome 2Assembled molecule152,011,3571148,983,374152,011,3573,6980
Chromosome 3AllAssembled moleculeUnlocalized scaffolds113,092,658112,832,562260,096211110,736,865110,523,304213,561112,832,562112,832,562260,0963,0142,909105000
Chromosome 4Assembled molecule71,317,294169,579,05871,317,2942,0300
Chromosome 4AAssembled molecule19,646,419119,025,80719,646,4197460
Chromosome 5Assembled molecule62,073,187160,344,64362,073,1872,0230
Chromosome 6Assembled molecule35,516,764134,466,85835,516,7641,1700
Chromosome 7Assembled molecule37,638,820136,762,82337,638,8201,0250
Chromosome 8Assembled molecule31,064,064130,250,08331,064,0641,0380
Chromosome 9Assembled molecule25,393,247124,465,54625,393,2471,0080
Chromosome 10Assembled molecule20,244,494119,753,15920,244,4945600
Chromosome 11Assembled molecule20,860,279120,115,20820,860,2798760
Chromosome 12Assembled molecule20,560,853119,952,36820,560,8536930
Chromosome 13Assembled molecule18,158,189117,549,36318,158,1896730
Chromosome 14Assembled molecule16,366,520115,849,57316,366,5206120
Chromosome 15Assembled molecule14,099,349113,516,54014,099,3496560
Chromosome 17Assembled molecule11,601,503110,877,76611,601,5037930
Chromosome 18Assembled molecule11,924,826111,179,88611,924,8268840
Chromosome 19Assembled molecule11,339,094110,691,29611,339,0947100
Chromosome 20Assembled molecule14,944,543114,203,15214,944,5438230
Chromosome 21Assembled molecule7,784,17717,195,7797,784,1776530
Chromosome 22Assembled molecule4,635,23413,939,3174,635,2347470
Chromosome 23Assembled molecule7,217,91116,421,6667,217,9118710
Chromosome 24Assembled molecule7,777,92016,975,3837,777,9208660
Chromosome 25Assembled molecule2,668,67412,198,0552,668,6745400
Chromosome 26Assembled molecule6,824,63616,119,1516,824,6367590
Chromosome 27Assembled molecule5,420,24814,725,7715,420,2487500
Chromosome 28Assembled molecule5,807,58415,176,1485,807,5846880
Chromosome WAllAssembled moleculeUnlocalized scaffolds3,105,97803,105,97828002802,994,03302,994,03323,508023,5085700570000
Chromosome ZAllAssembled moleculeUnlocalized scaffolds70,555,05370,434,751120,3023913869,674,52769,595,49979,02870,434,75170,434,7516,0172,8782,86612000
unplacedAssembled molecule14,324,8844,33512,676,4784,3149,6330
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,783116,78316,78300